Detailed information of SNP:
|
SNP ID:
sf1121231467(Gbrowse)
Chromosome: chr11 Position: 21231467 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 94.23% | 5.77% |
| All Indica | 758 | 91.95% | 8.05% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 58 | 81.03% | 18.97% |
| Indica I | 335 | 83.58% | 16.42% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121231467 | C->A | INTERGENIC | None |