Detailed information of SNP:
|
SNP ID:
sf1121239921(Gbrowse)
Chromosome: chr11 Position: 21239921 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 74.48% | 25.52% |
| All Indica | 798 | 60.90% | 39.10% |
| All Japonica | 479 | 96.45% | 3.55% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 327 | 97.55% | 2.45% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121239921 | G->C | LOC_Os11g36760(LOC_Os11g36760.1) | Non-Synonymous SNP |