Detailed information of SNP:
|
SNP ID:
sf1121241582(Gbrowse)
Chromosome: chr11 Position: 21241582 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 76.02% | 23.98% |
| All Indica | 799 | 62.58% | 37.42% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121241582 | A->C | LOC_Os11g36760(LOC_Os11g36760.1) | Synonymous |