Detailed information of SNP:
|
SNP ID:
sf1121264439(Gbrowse)
Chromosome: chr11 Position: 21264439 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 98.75% | 1.25% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 445 | 96.40% | 3.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 94.48% | 5.52% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121264439 | C->A | LOC_Os11g36820(LOC_Os11g36820.1) | Synonymous |