Detailed information of SNP:
|
SNP ID:
sf1121264514(Gbrowse)
Chromosome: chr11 Position: 21264514 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 63.63% | 36.37% |
| All Indica | 796 | 69.60% | 30.40% |
| All Japonica | 497 | 60.36% | 39.64% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 47.06% | 52.94% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 74.63% | 25.37% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121264514 | G->A | INTERGENIC | None |