Detailed information of SNP:
|
SNP ID:
sf1121278684(Gbrowse)
Chromosome: chr11 Position: 21278684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 66.14% | 33.86% |
| All Indica | 776 | 43.69% | 56.31% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 59.30% | 40.70% |
| Indica II | 199 | 27.14% | 72.86% |
| Indica Intermediate | 206 | 31.55% | 68.45% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121278684 | C->T | INTERGENIC | None |