Detailed information of SNP:
|
SNP ID:
sf1121284110(Gbrowse)
Chromosome: chr11 Position: 21284110 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 61.82% | 38.18% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 370 | 97.30% | 2.70% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121284110 | T->C | LOC_Os11g36870(LOC_Os11g36870.1) | Synonymous |