Detailed information of SNP:
|
SNP ID:
sf1121284940(Gbrowse)
Chromosome: chr11 Position: 21284940 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 95.25% | 4.75% |
| All Indica | 742 | 95.42% | 4.58% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 339 | 93.22% | 6.78% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 94.47% | 5.53% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121284940 | A->C | LOC_Os11g36870(LOC_Os11g36870.1) | Non-Synonymous SNP |