Detailed information of SNP:
|
SNP ID:
sf1121292523(Gbrowse)
Chromosome: chr11 Position: 21292523 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 55.82% | 44.18% |
| All Indica | 777 | 78.12% | 21.88% |
| All Japonica | 463 | 21.81% | 78.19% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 365 | 87.40% | 12.60% |
| Indica II | 206 | 77.18% | 22.82% |
| Indica Intermediate | 206 | 62.62% | 37.38% |
| Temperate Japonica | 317 | 16.72% | 83.28% |
| Tropical Japonica | 88 | 36.36% | 63.64% |
| Japonica Intermediate | 58 | 27.59% | 72.41% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121292523 | G->C | LOC_Os11g36880(LOC_Os11g36880.1) | Non-Synonymous SNP |