Detailed information of SNP:
|
SNP ID:
sf1121327485(Gbrowse)
Chromosome: chr11 Position: 21327485 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 75.42% | 24.58% |
| All Indica | 778 | 96.27% | 3.73% |
| All Japonica | 486 | 42.18% | 57.82% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 366 | 97.81% | 2.19% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 331 | 28.40% | 71.60% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121327485 | A->G | INTERGENIC | None |