Detailed information of SNP:
|
SNP ID:
sf1121331352(Gbrowse)
Chromosome: chr11 Position: 21331352 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 98.16% | 1.84% |
| All Indica | 751 | 97.20% | 2.80% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 97.21% | 2.79% |
| Indica II | 199 | 96.98% | 3.02% |
| Indica Intermediate | 194 | 97.42% | 2.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 40.00% | 60.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121331352 | T->A | LOC_Os11g36950(LOC_Os11g36950.1) | INTRON |