Detailed information of SNP:
|
SNP ID:
sf1121337115(Gbrowse)
Chromosome: chr11 Position: 21337115 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121337115 | A->G | INTERGENIC | None |