Detailed information of SNP:
|
SNP ID:
sf1121350708(Gbrowse)
Chromosome: chr11 Position: 21350708 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.00% | 41.00% |
| All Indica | 781 | 77.08% | 22.92% |
| All Japonica | 495 | 30.51% | 69.49% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 357 | 82.63% | 17.37% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 333 | 24.02% | 75.98% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121350708 | A->T | LOC_Os11g36970(LOC_Os11g36970.1) | INTRON |