Detailed information of SNP:
|
SNP ID:
sf1121350721(Gbrowse)
Chromosome: chr11 Position: 21350721 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.31% | 26.69% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121350721 | C->T | LOC_Os11g36970(LOC_Os11g36970.1) | INTRON |