Detailed information of SNP:
|
SNP ID:
sf1121351102(Gbrowse)
Chromosome: chr11 Position: 21351102 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.84% | 21.16% |
| All Indica | 799 | 77.85% | 22.15% |
| All Japonica | 496 | 82.86% | 17.14% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 334 | 91.32% | 8.68% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121351102 | G->A | LOC_Os11g36970(LOC_Os11g36970.1) | Non-Synonymous SNP |