Detailed information of SNP:
|
SNP ID:
sf1121371707(Gbrowse)
Chromosome: chr11 Position: 21371707 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.66% | 40.34% |
| All Indica | 798 | 83.08% | 16.92% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121371707 | T->C | INTERGENIC | None |