Detailed information of SNP:
|
SNP ID:
sf1121372308(Gbrowse)
Chromosome: chr11 Position: 21372308 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.83% | 29.17% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 496 | 52.42% | 47.58% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121372308 | A->G | INTERGENIC | None |