Detailed information of SNP:
|
SNP ID:
sf1121378548(Gbrowse)
Chromosome: chr11 Position: 21378548 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 798 | 57.14% | 42.86% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 74.63% | 25.37% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121378548 | C->T | INTERGENIC | None |