Detailed information of SNP:
|
SNP ID:
sf1121416512(Gbrowse)
Chromosome: chr11 Position: 21416512 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.19% | 31.81% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121416512 | T->A | LOC_Os11g37060(LOC_Os11g37060.1) | Non-Synonymous SNP |