Detailed information of SNP:
|
SNP ID:
sf1121421983(Gbrowse)
Chromosome: chr11 Position: 21421983 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 70.92% | 29.08% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 26.61% | 73.39% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121421983 | C->G | LOC_Os11g37070(LOC_Os11g37070.2) | Synonymous |
| sf1121421983 | C->G | LOC_Os11g37070(LOC_Os11g37070.1) | Synonymous |