Detailed information of SNP:
|
SNP ID:
sf1121432236(Gbrowse)
Chromosome: chr11 Position: 21432236 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 75.54% | 24.46% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 435 | 34.02% | 65.98% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 287 | 25.44% | 74.56% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 56 | 21.43% | 78.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121432236 | A->G | INTERGENIC | None |