Detailed information of SNP:
|
SNP ID:
sf1121432313(Gbrowse)
Chromosome: chr11 Position: 21432313 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 83.31% | 16.69% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 452 | 56.19% | 43.81% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 41.69% | 58.31% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121432313 | A->C | INTERGENIC | None |