Detailed information of SNP:
|
SNP ID:
sf1121434541(Gbrowse)
Chromosome: chr11 Position: 21434541 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.34% | 20.66% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 49.90% | 50.10% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121434541 | G->A | INTERGENIC | None |