Detailed information of SNP:
|
SNP ID:
sf1121434557(Gbrowse)
Chromosome: chr11 Position: 21434557 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.39% | 20.61% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121434557 | A->G | INTERGENIC | None |