Detailed information of SNP:
|
SNP ID:
sf1121443869(Gbrowse)
Chromosome: chr11 Position: 21443869 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 94.90% | 5.10% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 88.37% | 11.63% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 91.89% | 8.11% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121443869 | G->C | LOC_Os11g37110(LOC_Os11g37110.1) | INTRON |