Detailed information of SNP:
|
SNP ID:
sf1121445614(Gbrowse)
Chromosome: chr11 Position: 21445614 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.84% | 26.16% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 28.23% | 71.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 20.30% | 79.70% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121445614 | A->G | INTERGENIC | None |