Detailed information of SNP:
|
SNP ID:
sf1121446230(Gbrowse)
Chromosome: chr11 Position: 21446230 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.06% | 25.94% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 494 | 28.54% | 71.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 20.36% | 79.64% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 66 | 13.64% | 86.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121446230 | T->C | INTERGENIC | None |