Detailed information of SNP:



SNP ID: sf1121450059(Gbrowse)

Chromosome: chr11

Position: 21450059
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 81.03% 18.97%
All Indica799 99.87% 0.13%
All Japonica491 46.23% 53.77%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica332 34.04% 65.96%
Tropical Japonica93 90.32% 9.68%
Japonica Intermediate66 45.45% 54.55%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121450059 T->C INTERGENIC None