Detailed information of SNP:
|
SNP ID:
sf1121461778(Gbrowse)
Chromosome: chr11 Position: 21461778 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 72.43% | 27.57% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 47.89% | 52.11% |
| Aus | 49 | 38.78% | 61.22% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 33.43% | 66.57% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121461778 | T->C | LOC_Os11g37140(LOC_Os11g37140.1) | Synonymous |