Detailed information of SNP:
|
SNP ID:
sf1121473257(Gbrowse)
Chromosome: chr11 Position: 21473257 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 78.16% | 21.84% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 496 | 49.40% | 50.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 35.33% | 64.67% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121473257 | A->G | INTERGENIC | None |