Detailed information of SNP:



SNP ID: sf1121473257(Gbrowse)

Chromosome: chr11

Position: 21473257
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 78.16% 21.84%
All Indica796 93.84% 6.16%
All Japonica496 49.40% 50.60%
Aus67 98.51% 1.49%
Indica I373 91.15% 8.85%
Indica II212 96.23% 3.77%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica334 35.33% 64.67%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 58.82% 41.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121473257 A->G INTERGENIC None