Detailed information of SNP:
|
SNP ID:
sf1121475382(Gbrowse)
Chromosome: chr11 Position: 21475382 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 96.57% | 3.43% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 92.12% | 7.88% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121475382 | A->C | INTERGENIC | None |