Detailed information of SNP:
|
SNP ID:
sf1121477955(Gbrowse)
Chromosome: chr11 Position: 21477955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 70.74% | 29.26% |
| All Indica | 796 | 55.28% | 44.72% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121477955 | G->A | INTERGENIC | None |