Detailed information of SNP:
|
SNP ID:
sf1121479501(Gbrowse)
Chromosome: chr11 Position: 21479501 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.35% | 5.65% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 87.65% | 12.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121479501 | A->T | LOC_Os11g37170(LOC_Os11g37170.1) | Non-Synonymous SNP |