Detailed information of SNP:
|
SNP ID:
sf1121481438(Gbrowse)
Chromosome: chr11 Position: 21481438 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.71% | 10.29% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121481438 | C->T | LOC_Os11g37170(LOC_Os11g37170.1) | Non-Synonymous SNP |