Detailed information of SNP:



SNP ID: sf1121481438(Gbrowse)

Chromosome: chr11

Position: 21481438
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 89.71% 10.29%
All Indica799 98.50% 1.50%
All Japonica497 78.87% 21.13%
Aus67 92.54% 7.46%
Indica I375 99.47% 0.53%
Indica II213 99.06% 0.94%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 86.87% 13.13%
Tropical Japonica94 42.55% 57.45%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121481438 C->T LOC_Os11g37170(LOC_Os11g37170.1) Non-Synonymous SNP