Detailed information of SNP:
|
SNP ID:
sf1121489391(Gbrowse)
Chromosome: chr11 Position: 21489391 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 97.11% | 2.89% |
| All Indica | 705 | 95.18% | 4.82% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 98.84% | 1.16% |
| Indica II | 179 | 92.18% | 7.82% |
| Indica Intermediate | 180 | 91.11% | 8.89% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121489391 | G->T | INTERGENIC | None |