Detailed information of SNP:
|
SNP ID:
sf1121491490(Gbrowse)
Chromosome: chr11 Position: 21491490 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 57.21% | 42.79% |
| All Indica | 789 | 44.49% | 55.51% |
| All Japonica | 496 | 75.40% | 24.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 63.44% | 36.56% |
| Indica II | 209 | 30.14% | 69.86% |
| Indica Intermediate | 208 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121491490 | G->A | INTERGENIC | None |