Detailed information of SNP:
|
SNP ID:
sf1121511449(Gbrowse)
Chromosome: chr11 Position: 21511449 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121511449 | G->T | INTERGENIC | None |