Detailed information of SNP:
|
SNP ID:
sf1121523684(Gbrowse)
Chromosome: chr11 Position: 21523684 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.65% | 24.35% |
| All Indica | 797 | 84.32% | 15.68% |
| All Japonica | 497 | 56.54% | 43.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 38.81% | 61.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121523684 | T->C | LOC_Os11g37210(LOC_Os11g37210.1) | INTRON |