Detailed information of SNP:
|
SNP ID:
sf1121525223(Gbrowse)
Chromosome: chr11 Position: 21525223 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 91.10% | 8.90% |
| All Indica | 794 | 90.18% | 9.82% |
| All Japonica | 491 | 93.48% | 6.52% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121525223 | A->G | INTERGENIC | None |