Detailed information of SNP:
|
SNP ID:
sf1121532068(Gbrowse)
Chromosome: chr11 Position: 21532068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 52.48% | 47.52% |
| All Indica | 794 | 37.53% | 62.47% |
| All Japonica | 497 | 73.44% | 26.56% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 47.99% | 52.01% |
| Indica II | 211 | 29.38% | 70.62% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 79.70% | 20.30% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121532068 | G->A | LOC_Os11g37240(LOC_Os11g37240.1) | Non-Synonymous SNP |