Detailed information of SNP:
|
SNP ID:
sf1121535530(Gbrowse)
Chromosome: chr11 Position: 21535530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 98.84% | 1.16% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 457 | 96.94% | 3.06% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 99.06% | 0.94% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 56 | 83.93% | 16.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121535530 | C->T | INTERGENIC | None |