Detailed information of SNP:
|
SNP ID:
sf1121554032(Gbrowse)
Chromosome: chr11 Position: 21554032 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 57.62% | 42.38% |
| All Indica | 775 | 53.29% | 46.71% |
| All Japonica | 491 | 67.01% | 32.99% |
| Aus | 63 | 26.98% | 73.02% |
| Indica I | 366 | 36.89% | 63.11% |
| Indica II | 205 | 73.17% | 26.83% |
| Indica Intermediate | 204 | 62.75% | 37.25% |
| Temperate Japonica | 332 | 78.31% | 21.69% |
| Tropical Japonica | 91 | 26.37% | 73.63% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121554032 | T->C | LOC_Os11g37290(LOC_Os11g37290.1) | INTRON |