Detailed information of SNP:
|
SNP ID:
sf1121566316(Gbrowse)
Chromosome: chr11 Position: 21566316 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.34% | 37.66% |
| All Indica | 798 | 82.71% | 17.29% |
| All Japonica | 497 | 26.96% | 73.04% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121566316 | G->A | INTERGENIC | None |