Detailed information of SNP:
|
SNP ID:
sf1121580385(Gbrowse)
Chromosome: chr11 Position: 21580385 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.38% | 30.62% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 493 | 15.21% | 84.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121580385 | T->C | LOC_Os11g37340(LOC_Os11g37340.1) | Non-Synonymous SNP |