Detailed information of SNP:



SNP ID: sf1121584885(Gbrowse)

Chromosome: chr11

Position: 21584885
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 62.93% 37.07%
All Indica799 91.11% 8.89%
All Japonica497 14.29% 85.71%
Aus67 77.61% 22.39%
Indica I375 90.67% 9.33%
Indica II213 95.31% 4.69%
Indica Intermediate211 87.68% 12.32%
Temperate Japonica335 9.25% 90.75%
Tropical Japonica94 36.17% 63.83%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121584885 C->A INTERGENIC None