Detailed information of SNP:
|
SNP ID:
sf1121584885(Gbrowse)
Chromosome: chr11 Position: 21584885 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.93% | 37.07% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121584885 | C->A | INTERGENIC | None |