Detailed information of SNP:
|
SNP ID:
sf1121585520(Gbrowse)
Chromosome: chr11 Position: 21585520 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 67.42% | 32.58% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 496 | 35.69% | 64.31% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 23.35% | 76.65% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121585520 | T->A | INTERGENIC | None |