Detailed information of SNP:
|
SNP ID:
sf1121588243(Gbrowse)
Chromosome: chr11 Position: 21588243 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.67% | 23.33% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121588243 | A->C | INTERGENIC | None |