Detailed information of SNP:
|
SNP ID:
sf1121591865(Gbrowse)
Chromosome: chr11 Position: 21591865 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 81.81% | 18.19% |
| All Indica | 791 | 74.34% | 25.66% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 369 | 62.60% | 37.40% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121591865 | C->T | INTERGENIC | None |