Detailed information of SNP:
|
SNP ID:
sf1121596762(Gbrowse)
Chromosome: chr11 Position: 21596762 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 52.69% | 47.31% |
| All Indica | 799 | 27.28% | 72.72% |
| All Japonica | 491 | 89.41% | 10.59% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 330 | 93.64% | 6.36% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121596762 | G->A | INTERGENIC | None |