Detailed information of SNP:
|
SNP ID:
sf1121601541(Gbrowse)
Chromosome: chr11 Position: 21601541 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 83.40% | 16.60% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 486 | 65.23% | 34.77% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 324 | 75.93% | 24.07% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121601541 | G->A | INTERGENIC | None |